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apollo export

Commands to export data

apollo export gff3 ASSEMBLY

Export the annotations for an assembly to stdout as gff3

USAGE
$ apollo export gff3 ASSEMBLY [--profile <value>] [--config-file <value>] [--include-fasta]

ARGUMENTS
ASSEMBLY Export annotations for this assembly name or id

FLAGS
--config-file=<value> Use this config file (mostly for testing)
--include-fasta Include fasta sequence in output
--profile=<value> Use credentials from this profile

DESCRIPTION
Export the annotations for an assembly to stdout as gff3

EXAMPLES
Export annotations for myAssembly:

$ apollo export gff3 myAssembly > out.gff3

See code: src/commands/export/gff3.ts