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Upload assembly

This guide will walk you through the process of uploading an assembly file to Apollo3.

  1. Navigate to the Apollo3 and log in to your account.

  2. Click on the Add Assembly button under the Apollo dropdown from top navigation bar. alt text

  3. Now we have 3 options to upload the assembly:

    • Upload fasta file containing sequence

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    • Upload gff3 file containing annotation along with sequence. If we want to upload annotations along with the sequence, we needc to select Also load features from GFF3 file.

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    • Instead of uploading the files, we can also provide the URL of the files and query the data on the fly.

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  4. After selecting appropriate option and providing the necessary files, click on the Submit button. We can see the progress of the upload in the Jobs list widget and once the upload is complete we get a success message.

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  1. Now click on `Launch view' button to view the uploaded assembly in Apollo3 (If its not visible please refresh the page).

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Now we have successfully uploaded the assembly to Apollo3 and can start browsing/annotating the genome.